STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_1041KEGG: tbd:Tbd_2491 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Rmag_0615
KEGG: tbd:Tbd_2487 hypothetical protein.
 
     0.790
Rmag_1010
KEGG: tbd:Tbd_2490 hypothetical protein.
 
     0.780
Rmag_0861
Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit.
  
     0.774
Rmag_0859
PFAM: Polysulphide reductase, NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit.
  
     0.773
Rmag_0321
Hypothetical protein.
  
     0.769
yidC
Protein translocase subunit yidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
       0.768
Rmag_0115
KEGG: tbd:Tbd_2558 hypothetical protein.
  
     0.766
Rmag_1033
Hypothetical protein.
 
     0.760
Rmag_0331
Putative prophage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: tbd:Tbd_1516 hypothetical protein.
  
     0.744
Rmag_0269
Hypothetical protein.
  
     0.742
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.