STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ33947.1Phytoene desaturase. (497 aa)    
Predicted Functional Partners:
SJZ33930.1
Phytoene/squalene synthetase.
 
 0.993
SJZ33954.1
Putative membrane protein.
 
  
 0.967
SJZ33980.1
Lycopene beta-cyclase.
 
 
 0.926
SJZ33961.1
Beta-carotene 3-hydroxylase.
 
   
 0.916
SJZ33941.1
Isopentenyl-diphosphate delta-isomerase.
 
  
 0.836
SJZ33901.1
Phytoene desaturase.
 
  
 
0.815
SJZ93332.1
Hypothetical protein.
 
  
 0.767
SJZ33880.1
DNA-binding transcriptional regulator, MerR family.
 
  
 0.720
SJZ33886.1
RNA polymerase sigma-70 factor, ECF subfamily.
       0.619
SJZ72270.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.538
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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