STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ39182.1Signal transducer regulating beta-lactamase production, contains metallopeptidase domain. (584 aa)    
Predicted Functional Partners:
SJZ39171.1
Predicted transcriptional regulator.
 
 
  0.972
SJZ92977.1
Predicted transcriptional regulator.
 
 
  0.911
SKA00766.1
Predicted transcriptional regulator.
 
 
  0.859
SJZ44665.1
Predicted transcriptional regulator.
 
 
  0.813
SJZ34792.1
Predicted transcriptional regulator.
 
 
  0.795
SJZ39193.1
Hypothetical protein.
       0.773
SJZ80098.1
Predicted transcriptional regulator.
 
 
  0.765
SJZ92963.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
  
  
 
0.666
SJZ38440.1
WD40-like Beta Propeller Repeat.
  
 
 0.659
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
  0.636
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.