STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ32416.1Glycosyltransferase involved in cell wall bisynthesis. (307 aa)    
Predicted Functional Partners:
SJZ32406.1
Methyltransferase, FkbM family.
 
     0.768
SKA17113.1
Glycosyl transferase family 2.
  
     0.717
SJZ52755.1
Glycosyltransferase, GT2 family.
  
     0.713
SJZ32403.1
Hypothetical protein.
       0.661
SJZ32389.1
Selenocysteine lyase/Cysteine desulfurase.
       0.472
SJZ52872.1
Glycosyltransferase, GT2 family.
  
     0.456
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
  
    0.450
SJZ73778.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.420
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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