SJZ32426.1 protein (Sediminibacterium ginsengisoli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SJZ32426.1

Glycosyl transferase family 2. (315 aa)

Predicted Functional Partners:

SJZ32419.1

0.753

SKA17113.1

0.692

SJZ32432.1

0.639

SJZ73778.1

0.624

SJZ98680.1

0.616

SJZ52872.1

0.573

SJZ32441.1

0.564

SJZ74111.1

0.483

SKA17098.1

0.457

SJZ73679.1

0.414

Your Current Organism:

Sediminibacterium ginsengisoli

NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ32419.1	SJZ32426.1	SAMN04488132_10179	SAMN04488132_10180	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyl transferase family 2.	0.753
SJZ32419.1	SJZ32432.1	SAMN04488132_10179	SAMN04488132_10181	Glycosyltransferase involved in cell wall bisynthesis.	LAO/AO transport system kinase.	0.545
SJZ32419.1	SJZ32441.1	SAMN04488132_10179	SAMN04488132_10182	Glycosyltransferase involved in cell wall bisynthesis.	Hypothetical protein.	0.512
SJZ32419.1	SJZ73778.1	SAMN04488132_10179	SAMN04488132_10476	Glycosyltransferase involved in cell wall bisynthesis.	Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.	0.496
SJZ32419.1	SKA17098.1	SAMN04488132_10179	SAMN04488132_11355	Glycosyltransferase involved in cell wall bisynthesis.	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).	0.431
SJZ32419.1	SKA17113.1	SAMN04488132_10179	SAMN04488132_11357	Glycosyltransferase involved in cell wall bisynthesis.	Glycosyl transferase family 2.	0.457
SJZ32426.1	SJZ32419.1	SAMN04488132_10180	SAMN04488132_10179	Glycosyl transferase family 2.	Glycosyltransferase involved in cell wall bisynthesis.	0.753
SJZ32426.1	SJZ32432.1	SAMN04488132_10180	SAMN04488132_10181	Glycosyl transferase family 2.	LAO/AO transport system kinase.	0.639
SJZ32426.1	SJZ32441.1	SAMN04488132_10180	SAMN04488132_10182	Glycosyl transferase family 2.	Hypothetical protein.	0.564
SJZ32426.1	SJZ52872.1	SAMN04488132_10180	SAMN04488132_102453	Glycosyl transferase family 2.	Glycosyltransferase, GT2 family.	0.573
SJZ32426.1	SJZ73679.1	SAMN04488132_10180	SAMN04488132_10470	Glycosyl transferase family 2.	Hypothetical protein.	0.414
SJZ32426.1	SJZ73778.1	SAMN04488132_10180	SAMN04488132_10476	Glycosyl transferase family 2.	Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.	0.624
SJZ32426.1	SJZ74111.1	SAMN04488132_10180	SAMN04488132_10485	Glycosyl transferase family 2.	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).	0.483
SJZ32426.1	SJZ98680.1	SAMN04488132_10180	SAMN04488132_107143	Glycosyl transferase family 2.	Glycosyltransferase.	0.616
SJZ32426.1	SKA17098.1	SAMN04488132_10180	SAMN04488132_11355	Glycosyl transferase family 2.	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).	0.457
SJZ32426.1	SKA17113.1	SAMN04488132_10180	SAMN04488132_11357	Glycosyl transferase family 2.	Glycosyl transferase family 2.	0.692
SJZ32432.1	SJZ32419.1	SAMN04488132_10181	SAMN04488132_10179	LAO/AO transport system kinase.	Glycosyltransferase involved in cell wall bisynthesis.	0.545
SJZ32432.1	SJZ32426.1	SAMN04488132_10181	SAMN04488132_10180	LAO/AO transport system kinase.	Glycosyl transferase family 2.	0.639
SJZ32432.1	SJZ32441.1	SAMN04488132_10181	SAMN04488132_10182	LAO/AO transport system kinase.	Hypothetical protein.	0.678
SJZ32441.1	SJZ32419.1	SAMN04488132_10182	SAMN04488132_10179	Hypothetical protein.	Glycosyltransferase involved in cell wall bisynthesis.	0.512