STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ46755.1Hypothetical protein. (518 aa)    
Predicted Functional Partners:
SJZ46345.1
Starch-binding associating with outer membrane.
  
 
  0.767
SJZ95963.1
Hypothetical protein.
  
     0.699
SJZ46469.1
Alpha-L-fucosidase.
 
     0.673
SJZ46701.1
Rhamnogalacturonyl hydrolase YesR.
  
     0.651
SJZ39716.1
Sialidase-1.
  
 
  0.648
SJZ46455.1
Alginate lyase.
  
     0.631
SJZ86961.1
Lysophospholipase L1.
  
 
  0.624
SKA11026.1
Gliding motility-associated C-terminal domain-containing protein.
   
   0.623
SJZ98132.1
Starch-binding associating with outer membrane.
  
     0.590
SJZ46605.1
Sialidase-1.
  
 
  0.587
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.