STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ50532.1DNA-binding response regulator, LytR/AlgR family. (232 aa)    
Predicted Functional Partners:
SJZ50551.1
Histidine kinase.
 
   0.956
SJZ38792.1
Tetratricopeptide repeat-containing protein.
  
  0.857
SKA14892.1
Histidine kinase.
  
  0.847
SJZ35103.1
Histidine kinase.
  
   0.812
SJZ47589.1
Histidine kinase.
  
   0.812
SJZ50879.1
Histidine kinase.
  
   0.812
SJZ63531.1
Histidine kinase.
  
   0.812
SKA06788.1
Histidine kinase.
  
   0.811
SJZ64781.1
Histidine kinase.
  
   0.810
SJZ37903.1
Histidine kinase.
  
   0.808
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.