STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ52084.1Dipeptidyl aminopeptidase/acylaminoacyl peptidase. (781 aa)    
Predicted Functional Partners:
SJZ91151.1
Uncharacterized conserved protein, DUF885 familyt.
 
    0.756
SKA14603.1
Predicted arabinose efflux permease, MFS family.
 
      0.719
SJZ52077.1
Hypothetical protein.
       0.566
SJZ67558.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
     0.515
SJZ92342.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
  
 
  0.505
SJZ52092.1
Ferredoxin, 2Fe-2S.
       0.448
SJZ46368.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
     0.422
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.