STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ52283.1Hypothetical protein. (275 aa)    
Predicted Functional Partners:
SJZ77378.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.775
SJZ79188.1
Hypothetical protein.
  
     0.775
SJZ38406.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.774
SJZ38423.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.774
SJZ44924.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.774
SJZ61862.1
Hypothetical protein.
  
     0.772
SJZ58258.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.771
SJZ47255.1
CarboxypepD_reg-like domain-containing protein.
  
     0.770
SKA19069.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.769
SJZ44904.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.767
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (10%) [HD]