STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ61404.1Lysophospholipase L1. (235 aa)    
Predicted Functional Partners:
SJZ61416.1
Glycerophosphoryl diester phosphodiesterase.
       0.777
SJZ61455.1
Calcineurin-like phosphoesterase.
     0.772
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
       0.625
SJZ61501.1
Hypothetical protein.
 
     0.593
SJZ61374.1
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.539
SJZ61512.1
Starch-binding associating with outer membrane.
 
    0.492
SKA17137.1
Beta-aspartyl-peptidase (threonine type).
 
      0.488
SJZ61540.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.472
SJZ31999.1
Protein of unknown function.
   
  0.456
SJZ92641.1
Hypothetical protein.
   
  0.456
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.