STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ62032.1Glycosyltransferase involved in cell wall bisynthesis. (373 aa)    
Predicted Functional Partners:
SJZ32419.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.741
SJZ62058.1
Uncharacterized conserved protein, DUF885 familyt.
       0.671
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.618
SKA00947.1
ATP-dependent DNA helicase RecQ.
    
   0.614
SKA00983.1
UvrD-like helicase C-terminal domain-containing protein.
    
   0.614
SJZ61992.1
Hypothetical protein.
  
    0.602
SJZ62004.1
Gliding motility-associated protein GldC.
       0.596
SJZ61974.1
Membrane protein required for colicin V production.
       0.580
SJZ62082.1
3-hydroxybutyryl-CoA dehydrogenase.
       0.577
SJZ32282.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily.
  
 
   0.565
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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