STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ58641.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (216 aa)    
Predicted Functional Partners:
SKA14695.1
PAS domain S-box-containing protein.
  
 0.973
SJZ58601.1
Histidine kinase.
 
   0.960
SJZ64336.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
0.957
SJZ47971.1
Signal transduction histidine kinase.
  
  0.927
SJZ36473.1
Hypothetical protein.
  
 0.916
SJZ67048.1
Signal transduction histidine kinase.
  
 0.898
SKA09770.1
PAS domain S-box-containing protein.
 
  0.867
SJZ68699.1
Two-component system, NarL family, sensor histidine kinase UhpB.
  0.866
SJZ71780.1
Histidine kinase.
  
   0.838
SJZ88432.1
Hypothetical protein.
  
   0.838
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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