STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ58258.1Type IX secretion system membrane protein, PorP/SprF family. (344 aa)    
Predicted Functional Partners:
SJZ58242.1
Gliding motility-associated C-terminal domain-containing protein.
 
     0.945
SJZ52283.1
Hypothetical protein.
  
     0.771
SJZ38423.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.770
SJZ38406.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.769
SJZ79188.1
Hypothetical protein.
  
     0.764
SJZ61862.1
Hypothetical protein.
  
     0.763
SJZ67965.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.756
SJZ59356.1
Patatin-like phospholipase.
  
     0.756
SJZ44904.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.754
SJZ93416.1
Hypothetical protein.
  
     0.754
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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