STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ63225.1Histidine kinase. (353 aa)    
Predicted Functional Partners:
SJZ63239.1
Two component transcriptional regulator, LytTR family.
 
   0.956
SKA14881.1
Two component transcriptional regulator, LytTR family.
  
  0.843
SKA09737.1
Two component transcriptional regulator, LytTR family.
  
  0.817
SJZ37916.1
Two component transcriptional regulator, LytTR family.
  
   0.813
SJZ50860.1
DNA-binding response regulator, LytR/AlgR family.
  
   0.813
SJZ83952.1
Response regulator receiver domain-containing protein.
  
   0.813
SKA06772.1
DNA-binding response regulator, LytR/AlgR family.
  
   0.813
SJZ38780.1
Two component transcriptional regulator, LytTR family.
  
  0.812
SKA02764.1
Two component transcriptional regulator, LytTR family.
 
   0.812
SJZ63497.1
DNA-binding response regulator, LytR/AlgR family.
  
   0.811
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.