SJZ66138.1 protein (Sediminibacterium ginsengisoli)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

SJZ66138.1

SusD family protein. (457 aa)

Predicted Functional Partners:

SJZ66123.1

0.951

SJZ66101.1

0.872

SJZ84050.1

0.775

SJZ36776.1

0.763

SJZ66175.1

0.661

SJZ83970.1

0.635

SJZ81052.1

0.632

SJZ53878.1

0.608

SJZ81007.1

0.608

SJZ39929.1

0.598

Your Current Organism:

Sediminibacterium ginsengisoli

NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SJZ36776.1	SJZ66138.1	SAMN04488132_101418	SAMN04488132_103385	DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.	SusD family protein.	0.763
SJZ39929.1	SJZ66123.1	SAMN04488132_101602	SAMN04488132_103384	TonB-dependent Receptor Plug Domain.	TonB-linked outer membrane protein, SusC/RagA family.	0.522
SJZ39929.1	SJZ66138.1	SAMN04488132_101602	SAMN04488132_103385	TonB-dependent Receptor Plug Domain.	SusD family protein.	0.598
SJZ39929.1	SJZ84050.1	SAMN04488132_101602	SAMN04488132_10546	TonB-dependent Receptor Plug Domain.	TonB-linked outer membrane protein, SusC/RagA family.	0.634
SJZ53878.1	SJZ66138.1	SAMN04488132_102487	SAMN04488132_103385	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	SusD family protein.	0.608
SJZ66101.1	SJZ66123.1	SAMN04488132_103383	SAMN04488132_103384	Thiol-disulfide isomerase or thioredoxin.	TonB-linked outer membrane protein, SusC/RagA family.	0.893
SJZ66101.1	SJZ66138.1	SAMN04488132_103383	SAMN04488132_103385	Thiol-disulfide isomerase or thioredoxin.	SusD family protein.	0.872
SJZ66101.1	SJZ84050.1	SAMN04488132_103383	SAMN04488132_10546	Thiol-disulfide isomerase or thioredoxin.	TonB-linked outer membrane protein, SusC/RagA family.	0.694
SJZ66123.1	SJZ39929.1	SAMN04488132_103384	SAMN04488132_101602	TonB-linked outer membrane protein, SusC/RagA family.	TonB-dependent Receptor Plug Domain.	0.522
SJZ66123.1	SJZ66101.1	SAMN04488132_103384	SAMN04488132_103383	TonB-linked outer membrane protein, SusC/RagA family.	Thiol-disulfide isomerase or thioredoxin.	0.893
SJZ66123.1	SJZ66138.1	SAMN04488132_103384	SAMN04488132_103385	TonB-linked outer membrane protein, SusC/RagA family.	SusD family protein.	0.951
SJZ66123.1	SJZ66175.1	SAMN04488132_103384	SAMN04488132_103387	TonB-linked outer membrane protein, SusC/RagA family.	Hypothetical protein.	0.523
SJZ66123.1	SJZ83970.1	SAMN04488132_103384	SAMN04488132_10543	TonB-linked outer membrane protein, SusC/RagA family.	Methylamine utilisation protein MauE.	0.502
SJZ66138.1	SJZ36776.1	SAMN04488132_103385	SAMN04488132_101418	SusD family protein.	DNA sulfur modification protein DndE; Belongs to the glycosyl hydrolase 28 family.	0.763
SJZ66138.1	SJZ39929.1	SAMN04488132_103385	SAMN04488132_101602	SusD family protein.	TonB-dependent Receptor Plug Domain.	0.598
SJZ66138.1	SJZ53878.1	SAMN04488132_103385	SAMN04488132_102487	SusD family protein.	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.	0.608
SJZ66138.1	SJZ66101.1	SAMN04488132_103385	SAMN04488132_103383	SusD family protein.	Thiol-disulfide isomerase or thioredoxin.	0.872
SJZ66138.1	SJZ66123.1	SAMN04488132_103385	SAMN04488132_103384	SusD family protein.	TonB-linked outer membrane protein, SusC/RagA family.	0.951
SJZ66138.1	SJZ66175.1	SAMN04488132_103385	SAMN04488132_103387	SusD family protein.	Hypothetical protein.	0.661
SJZ66138.1	SJZ81007.1	SAMN04488132_103385	SAMN04488132_104343	SusD family protein.	TonB-linked outer membrane protein, SusC/RagA family.	0.608

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Network Stats

number of nodes:

11

number of edges:

40

average node degree:

7.27

avg. local clustering coefficient:

0.809

expected number of edges:

26

PPI enrichment p-value:

0.0076

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0051536

Iron-sulfur cluster binding

5 of 51

1.39

1.31

0.00036

GO:0016491

Oxidoreductase activity

9 of 195

1.06

1.22

1.63e-06

GO:0051538

3 iron, 4 sulfur cluster binding

2 of 4

2.1

0.92

0.0188

GO:0050660

Flavin adenine dinucleotide binding

3 of 25

1.48

0.81

0.0188

GO:0071949

FAD binding

2 of 9

1.74

0.69

0.0460

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:597

Mixed, incl. Oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, and Oxidoreductase NAD-binding domain

5 of 16

1.89

2.67

1.04e-06

CL:563

Mixed, incl. Fatty acid metabolic process, and Oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor

6 of 33

1.66

2.37

7.11e-07

CL:471

Mixed, incl. Oxidative phosphorylation, and Fatty acid metabolic process

8 of 79

1.4

2.07

6.59e-08

CL:617

Mixed, incl. FAD linked oxidases, C-terminal domain, and Isoprene biosynthesis

3 of 6

2.1

1.75

0.00039

CL:600

Oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor, and Oxidoreductase NAD-binding domain

2 of 5

2.0

0.84

0.0256

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map01120

Microbial metabolism in diverse environments

6 of 163

0.96

0.77

0.0018

map01100

Metabolic pathways

9 of 800

0.45

0.31

0.0245

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0070469

Respirasome

3 of 23

1.51

0.75

0.0277

GOCC:1990204

Oxidoreductase complex

3 of 32

1.37

0.68

0.0342

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0560

Oxidoreductase

5 of 94

1.12

0.83

0.0046

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF02913

FAD linked oxidases, C-terminal domain

2 of 2

2.4

0.8

0.0347

PF13534

4Fe-4S dicluster domain

2 of 3

2.22

0.79

0.0347

PF01565

FAD binding domain

2 of 3

2.22

0.79

0.0347

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