STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ66524.1GH3 auxin-responsive promoter. (509 aa)    
Predicted Functional Partners:
SJZ34233.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.722
SKA15477.1
Protein of unknown function.
  
     0.722
SJZ72920.1
Cell division protein FtsQ.
  
     0.698
SKA06341.1
Acyl-CoA reductase (LuxC).
  
 
  0.676
SJZ66242.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
   
 0.673
SKA12490.1
Tetratricopeptide repeat-containing protein.
  
     0.646
SKA19954.1
RNA polymerase Rpb6.
 
     0.638
SJZ66549.1
Lipopolysaccharide export system ATP-binding protein.
       0.633
SKA20521.1
DNA polymerase-3 subunit epsilon.
  
     0.616
SKA01802.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.580
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.