STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ67005.1Helix-turn-helix domain-containing protein. (285 aa)    
Predicted Functional Partners:
SJZ67020.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.724
SJZ93372.1
Kef-type K+ transport system, membrane component KefB.
  
     0.617
SKA19933.1
Starch-binding associating with outer membrane.
  
     0.581
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.535
SJZ47150.1
EamA-like transporter family protein.
  
     0.522
SJZ66969.1
L,D-transpeptidase catalytic domain.
       0.487
SKA09823.1
Hypothetical protein.
  
     0.464
SJZ36473.1
Hypothetical protein.
     
 0.452
SKA19929.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.446
SJZ36830.1
Pectate lyase, PelA/Pel-15E family.
  
     0.443
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.