STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ59176.1N-acetylmuramoyl-L-alanine amidase. (389 aa)    
Predicted Functional Partners:
SJZ86892.1
N-acetylmuramoyl-L-alanine amidase.
  
  
  0.919
SJZ53892.1
Outer membrane lipoprotein-sorting protein.
    
   0.757
SJZ32476.1
LPS export ABC transporter protein LptC.
  
 0.668
SJZ68000.1
Rhomboid family protein.
   
   0.611
SJZ68041.1
Membrane associated serine protease, rhomboid family.
   
   0.611
SKA10831.1
Membrane associated serine protease, rhomboid family.
   
   0.611
SJZ51145.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.501
SJZ93814.1
Copper chaperone CopZ.
  
     0.491
SJZ62848.1
Hypothetical protein.
  
 
  0.459
SKA12397.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.457
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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