STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ75562.1Por secretion system C-terminal sorting domain-containing protein. (1276 aa)    
Predicted Functional Partners:
SKA14695.1
PAS domain S-box-containing protein.
   
 0.842
SJZ36473.1
Hypothetical protein.
   
 0.835
SJZ64336.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.822
SJZ43853.1
FHA domain-containing protein.
   
 
 0.700
SJZ43929.1
Protein phosphatase.
 
 0.681
SJZ75542.1
Hypothetical protein.
 
     0.628
SJZ35544.1
Signal transduction histidine kinase.
  
 
 0.626
SJZ35538.1
Starch-binding associating with outer membrane.
  
    0.616
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.573
SJZ64340.1
Signal transduction histidine kinase.
    
 0.570
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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