STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ77642.1Outer membrane protein beta-barrel domain-containing protein. (254 aa)    
Predicted Functional Partners:
SJZ71880.1
Cell surface protein SprA.
  
   
 0.803
SKA06092.1
Outer membrane protein assembly factor BamD, BamD/ComL family.
  
   
 0.801
SJZ61862.1
Hypothetical protein.
 
     0.796
SJZ34267.1
Gliding motility-associated protein GldM.
  
   
 0.781
SJZ34260.1
Gliding motility-associated protein GldL.
 
   
 0.777
SKA02428.1
Protein of unknown function.
  
     0.773
SJZ78829.1
Hypothetical protein.
  
   
 0.772
SJZ74536.1
Hypothetical protein.
  
   
 0.770
SKA19965.1
Protein of unknown function.
  
     0.769
SJZ92383.1
Tetratricopeptide repeat-containing protein.
  
     0.768
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.