STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ77930.1Putative ATP-dependent endonuclease of the OLD family. (585 aa)    
Predicted Functional Partners:
SKA16290.1
Type I restriction modification DNA specificity domain-containing protein.
  
  
 0.975
SJZ77903.1
DNA helicase-2 / ATP-dependent DNA helicase PcrA.
   
 0.967
SKA16323.1
Type I restriction enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.769
SJZ83058.1
Putative NADH-flavin reductase.
   
    0.666
SKA01234.1
Type I restriction modification DNA specificity domain-containing protein.
  
    0.619
SKA16277.1
Type I restriction enzyme, S subunit.
  
    0.619
SJZ77957.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
       0.485
SJZ77995.1
Hypothetical protein.
       0.485
SJZ77877.1
Integrase/recombinase XerD; Belongs to the 'phage' integrase family.
 
     0.468
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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