Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SJZ32282.1 | SJZ34482.1 | SAMN04488132_10161 | SAMN04488132_101257 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.614 |
SJZ32282.1 | SJZ78109.1 | SAMN04488132_10161 | SAMN04488132_104238 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | Hypothetical protein. | 0.419 |
SJZ32282.1 | topA | SAMN04488132_10161 | SAMN04488132_102379 | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.654 |
SJZ34482.1 | SJZ32282.1 | SAMN04488132_101257 | SAMN04488132_10161 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.614 |
SJZ34482.1 | SJZ78109.1 | SAMN04488132_101257 | SAMN04488132_104238 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | Hypothetical protein. | 0.435 |
SJZ34482.1 | topA | SAMN04488132_101257 | SAMN04488132_102379 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.449 |
SJZ38430.1 | SJZ78109.1 | SAMN04488132_101514 | SAMN04488132_104238 | DNA processing protein. | Hypothetical protein. | 0.411 |
SJZ38430.1 | topA | SAMN04488132_101514 | SAMN04488132_102379 | DNA processing protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.736 |
SJZ59356.1 | SJZ78109.1 | SAMN04488132_10351 | SAMN04488132_104238 | Patatin-like phospholipase. | Hypothetical protein. | 0.609 |
SJZ77763.1 | SJZ78109.1 | SAMN04488132_104226 | SAMN04488132_104238 | Site-specific DNA recombinase. | Hypothetical protein. | 0.511 |
SJZ77763.1 | SJZ78208.1 | SAMN04488132_104226 | SAMN04488132_104241 | Site-specific DNA recombinase. | AAA-like domain-containing protein. | 0.723 |
SJZ78109.1 | SJZ32282.1 | SAMN04488132_104238 | SAMN04488132_10161 | Hypothetical protein. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.419 |
SJZ78109.1 | SJZ34482.1 | SAMN04488132_104238 | SAMN04488132_101257 | Hypothetical protein. | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.435 |
SJZ78109.1 | SJZ38430.1 | SAMN04488132_104238 | SAMN04488132_101514 | Hypothetical protein. | DNA processing protein. | 0.411 |
SJZ78109.1 | SJZ59356.1 | SAMN04488132_104238 | SAMN04488132_10351 | Hypothetical protein. | Patatin-like phospholipase. | 0.609 |
SJZ78109.1 | SJZ77763.1 | SAMN04488132_104238 | SAMN04488132_104226 | Hypothetical protein. | Site-specific DNA recombinase. | 0.511 |
SJZ78109.1 | SJZ78208.1 | SAMN04488132_104238 | SAMN04488132_104241 | Hypothetical protein. | AAA-like domain-containing protein. | 0.777 |
SJZ78109.1 | SKA01201.1 | SAMN04488132_104238 | SAMN04488132_10834 | Hypothetical protein. | Hypothetical protein. | 0.774 |
SJZ78109.1 | topA | SAMN04488132_104238 | SAMN04488132_102379 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.530 |
SJZ78208.1 | SJZ77763.1 | SAMN04488132_104241 | SAMN04488132_104226 | AAA-like domain-containing protein. | Site-specific DNA recombinase. | 0.723 |
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