STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ73894.1Chain length determinant protein. (364 aa)    
Predicted Functional Partners:
SJZ73856.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
  0.976
SJZ73778.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
 
 0.933
SJZ74439.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
 
  0.897
SJZ73827.1
Capsule assembly protein Wzi.
 
     0.765
SJZ73660.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
    0.719
SJZ99294.1
Polysaccharide export outer membrane protein.
   
  0.583
SKA01493.1
Uncharacterised nucleotidyltransferase.
   
  0.583
SJZ73731.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.566
SKA17080.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
 0.550
SKA17042.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.532
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.