STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ86005.1Outer membrane receptor proteins, mostly Fe transport. (799 aa)    
Predicted Functional Partners:
SKA13556.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.666
SJZ97420.1
TonB family C-terminal domain-containing protein.
  
   0.595
SKA16494.1
Outer membrane receptor for ferrienterochelin and colicins.
  
    0.577
SJZ46331.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
  0.526
SKA11026.1
Gliding motility-associated C-terminal domain-containing protein.
    
   0.491
SKA13544.1
Protein of unknown function.
  
     0.480
SKA13570.1
Hypothetical protein.
  
     0.461
SKA13536.1
Hypothetical protein.
  
     0.444
SJZ64751.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
 
0.443
SJZ72616.1
Protein of unknown function.
  
     0.443
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.