STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ86440.1Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain. (172 aa)    
Predicted Functional Partners:
SJZ39664.1
Allosteric NADP-dependent malic enzyme.
    
  0.741
SJZ86390.1
ABC-2 type transport system ATP-binding protein.
   
 
 0.583
fbp
D-fructose 1,6-bisphosphatase; Belongs to the FBPase class 1 family.
     
 0.546
SJZ86455.1
Aspartate kinase; Belongs to the aspartokinase family.
       0.543
SJZ86405.1
Hypothetical protein.
       0.542
SJZ86353.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
  
  
 0.497
SJZ58428.1
Beta-glucosidase.
  
 
  0.489
SJZ86372.1
DinB superfamily protein.
       0.484
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
    
  0.475
SJZ80692.1
Phosphoenolpyruvate carboxylase, type 1; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
  
  
  0.475
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.