STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ88083.1Signal transduction histidine kinase. (690 aa)    
Predicted Functional Partners:
SJZ36473.1
Hypothetical protein.
 
0.998
SJZ64336.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.965
SKA14695.1
PAS domain S-box-containing protein.
 
0.960
SJZ36458.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
0.943
SJZ64340.1
Signal transduction histidine kinase.
 
0.924
SJZ35565.1
His Kinase A (phospho-acceptor) domain-containing protein.
0.907
SJZ45446.1
PAS fold-containing protein.
 
 
 0.906
SJZ67048.1
Signal transduction histidine kinase.
 
0.887
SKA02845.1
PAS domain S-box-containing protein.
 
0.864
SKA18660.1
Response regulator receiver domain-containing protein.
  
   0.859
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.