STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ88247.1Alginate lyase. (705 aa)    
Predicted Functional Partners:
SJZ88267.1
poly(beta-D-mannuronate) lyase.
 
     0.949
SJZ88233.1
Cupin domain protein.
 
     0.938
SJZ88200.1
MFS transporter, ACS family, hexuronate transporter.
 
    0.913
SJZ88300.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.909
SJZ88286.1
Starch-binding associating with outer membrane.
 
     0.902
SJZ88336.1
Transcriptional regulator, GntR family.
 
     0.891
SJZ46508.1
poly(beta-D-mannuronate) lyase.
 
  
  0.888
SJZ88176.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.882
SJZ88211.1
Acetyl esterase/lipase.
 
     0.805
SJZ46583.1
Pectate lyase superfamily protein.
  
 
  0.699
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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