STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ85206.1Phage/plasmid-like protein TIGR03299. (348 aa)    
Predicted Functional Partners:
SJZ85183.1
Single-strand DNA-binding protein.
 
     0.871
SJZ85455.1
PRTRC system ThiF family protein.
 
   
 0.858
SJZ85492.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
   
 0.766
SJZ85503.1
Type IV secretory system Conjugative DNA transfer.
 
     0.745
SJZ83821.1
Protein of unknown function.
  
     0.708
SJZ83727.1
Bacteroides conjugative transposon TraJ protein.
  
     0.695
SJZ83682.1
Bacteroides conjugative transposon TraN protein.
  
     0.692
SJZ83716.1
Bacteroides conjugative transposon TraK protein.
  
     0.683
SJZ83799.1
Protein of unknown function.
  
     0.677
SJZ83696.1
Bacteroides conjugative transposon TraM protein.
  
     0.661
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.