STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ90912.1TPR repeat-containing protein. (1252 aa)    
Predicted Functional Partners:
SJZ39201.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.671
SJZ90810.1
Uncharacterized membrane protein YhhN.
       0.648
SJZ36473.1
Hypothetical protein.
    
 0.636
SJZ64336.1
His Kinase A (phospho-acceptor) domain-containing protein.
    
 0.612
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.598
SJZ84937.1
Protein of unknown function.
 
 
   0.558
SJZ62643.1
Hypothetical protein.
  
     0.555
SJZ92731.1
WD domain-containing protein, G-beta repeat-containing protein.
   
   0.552
SJZ73503.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
   
   0.528
SJZ61092.1
Hypothetical protein.
 
     0.520
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.