STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ91433.1HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (418 aa)    
Predicted Functional Partners:
SJZ91368.1
ABC-type antimicrobial peptide transport system, permease component.
 
 
 0.956
SJZ91410.1
Putative ABC transport system ATP-binding protein.
 
   0.956
SJZ91337.1
Duplicated orphan permease.
 
   0.936
SJZ91320.1
ABC-type transport system, involved in lipoprotein release, permease component.
 
   0.929
SJZ91294.1
Putative ABC transport system permease protein.
 
   0.924
SJZ47556.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.921
SJZ85731.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.921
SJZ91236.1
ABC-type lipoprotein export system, ATPase component.
 
   0.919
SJZ91212.1
Outer membrane protein.
 
   0.897
SJZ91273.1
FtsX-like permease family protein.
 
 
   0.894
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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