STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ98874.1Methyltransferase, FkbM family. (220 aa)    
Predicted Functional Partners:
SJZ98751.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.783
SJZ98773.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.774
SJZ98808.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.773
SJZ98827.1
Hypothetical protein.
       0.773
SJZ98798.1
Hypothetical protein.
       0.741
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
 
 0.732
rpmD
LSU ribosomal protein L30P.
   
   0.697
SJZ67989.1
23S rRNA (uracil1939-C5)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.687
SJZ98650.1
Tyrosine-protein phosphatase YwqE.
       0.669
SJZ98680.1
Glycosyltransferase.
       0.669
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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