STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA01201.1Hypothetical protein. (354 aa)    
Predicted Functional Partners:
SKA01248.1
Type I restriction enzyme M protein.
     
 0.790
SKA01218.1
Restriction system-associated AAA family ATPase.
       0.787
SKA01234.1
Type I restriction modification DNA specificity domain-containing protein.
       0.787
SKA01190.1
AAA domain (dynein-related subfamily).
       0.786
SKA01174.1
5-methylcytosine-specific restriction enzyme subunit McrC.
       0.782
SJZ78044.1
Hypothetical protein.
   
 
 0.774
SJZ78109.1
Hypothetical protein.
   
 
 0.774
SJZ85503.1
Type IV secretory system Conjugative DNA transfer.
   
 
 0.774
SKA01258.1
Type I restriction enzyme, R subunit.
       0.698
cysC
Adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate.
    
  0.608
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.