STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA01740.1Heme exporter protein B. (219 aa)    
Predicted Functional Partners:
SKA01900.1
Heme exporter protein C.
 
 0.998
SJZ35569.1
ABC-type multidrug transport system, ATPase component.
 
 0.994
SJZ86165.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.918
SJZ86145.1
Cytochrome c-type biogenesis protein CcmF.
 
  
 0.846
tdk
Thymidine kinase.
       0.787
SJZ49843.1
Hypothetical protein.
  
     0.766
SJZ47255.1
CarboxypepD_reg-like domain-containing protein.
  
     0.749
SJZ35645.1
Hypothetical protein.
  
     0.724
SJZ73172.1
Hypothetical protein.
  
     0.685
SKA01706.1
Hypothetical protein.
 
     0.632
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.