STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgAStarch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (470 aa)    
Predicted Functional Partners:
SKA05479.1
Glucose-1-phosphate adenylyltransferase.
 
 0.997
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.995
SJZ50714.1
Starch synthase.
  
  
  0.954
SKA12973.1
4-alpha-glucanotransferase.
 
 
 0.929
SJZ91734.1
Starch phosphorylase.
 
 
 0.866
SKA06390.1
Glycosidase.
 
 
 0.771
SJZ64383.1
Alcohol dehydrogenase, class IV.
   
    0.634
SKA05495.1
Glucokinase.
 
   
 0.630
SJZ44436.1
Hypothetical protein.
   
    0.422
SKA01358.1
Trehalose utilisation.
   
    0.422
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.