STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA05865.1Subtilase family protein; Belongs to the peptidase S8 family. (566 aa)    
Predicted Functional Partners:
SKA05875.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
       0.777
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
   0.629
SJZ60991.1
Hypothetical protein.
  
     0.536
SJZ46345.1
Starch-binding associating with outer membrane.
  
  0.506
SJZ54491.1
Cystathionine beta-synthase.
  
   
 0.491
SKA11026.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
 0.488
SJZ53391.1
Choice-of-anchor A domain-containing protein.
   
  0.477
SJZ53423.1
Por secretion system C-terminal sorting domain-containing protein.
   
  0.477
SJZ64880.1
Gliding motility-associated C-terminal domain-containing protein.
   
  0.477
SJZ64887.1
Hypothetical protein.
   
  0.477
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.