STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA05896.1Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family. (183 aa)    
Predicted Functional Partners:
SKA11039.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
  
     0.761
SKA18826.1
Polyisoprenoid-binding protein YceI; Belongs to the UPF0312 family.
  
     0.757
SJZ43613.1
Hypothetical protein.
  
     0.607
SKA05887.1
Hypothetical protein.
       0.536
sucC
succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
       0.531
SJZ81091.1
Hypothetical protein.
  
     0.530
SJZ32466.1
Long-chain fatty acid transport protein.
  
     0.465
SJZ73827.1
Capsule assembly protein Wzi.
  
     0.454
SJZ60809.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
  
     0.440
SJZ60711.1
Cytochrome C oxidase, cbb3-type, subunit III.
  
     0.423
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.