STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA06390.1Glycosidase. (422 aa)    
Predicted Functional Partners:
SJZ34127.1
Basic amino acid/polyamine antiporter, APA family.
   
 0.936
SJZ39322.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
 0.936
SJZ51819.1
Basic amino acid/polyamine antiporter, APA family.
   
 0.936
SKA08950.1
C-terminus of AA_permease.
   
 0.936
SKA08964.1
Amino acid permease.
   
 0.936
SKA17153.1
Amino acid/polyamine/organocation transporter, APC superfamily.
   
 0.936
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 
0.884
SJZ91734.1
Starch phosphorylase.
 
 0.875
SJZ50714.1
Starch synthase.
 
 
 0.861
SKA12973.1
4-alpha-glucanotransferase.
 
 
 0.861
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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