STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA09402.1Alcohol dehydrogenase GroES-like domain-containing protein. (189 aa)    
Predicted Functional Partners:
SJZ66242.1
oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.
  
 0.854
SJZ79744.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.773
SJZ72756.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.764
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
     
 0.742
SJZ39664.1
Allosteric NADP-dependent malic enzyme.
    
 0.667
SJZ45257.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.627
SJZ86982.1
3-hydroxyisobutyrate dehydrogenase.
  
  
  0.615
SJZ45895.1
Hydroxyacylglutathione hydrolase.
  
 0.584
SJZ98087.1
Threonine dehydrogenase.
 
  
 0.575
SJZ64383.1
Alcohol dehydrogenase, class IV.
     
 0.545
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.