STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA10291.1Outer membrane receptor proteins, mostly Fe transport. (816 aa)    
Predicted Functional Partners:
SJZ97420.1
TonB family C-terminal domain-containing protein.
  
   0.614
SJZ93814.1
Copper chaperone CopZ.
  
     0.590
SKA02569.1
Hypothetical protein.
  
     0.556
SJZ36286.1
Outer membrane transport energization protein TonB.
  
   0.515
SJZ36259.1
Outer membrane transport energization protein TonB.
  
   0.503
SKA11026.1
Gliding motility-associated C-terminal domain-containing protein.
    
   0.491
SKA15381.1
Outer membrane protein TolC.
  
     0.471
SJZ80764.1
Conserved hypothetical protein.
  
     0.438
SJZ54993.1
CarboxypepD_reg-like domain-containing protein.
   
   0.436
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.436
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.