STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA13707.1Membrane-associated phospholipid phosphatase. (292 aa)    
Predicted Functional Partners:
SKA13696.1
Hypothetical protein.
       0.746
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.671
SKA19954.1
RNA polymerase Rpb6.
    
   0.553
SKA16656.1
Calcineurin-like phosphoesterase.
  
     0.542
SKA13719.1
Hypothetical protein; Belongs to the pirin family.
       0.525
SJZ84320.1
Surface antigen.
  
     0.515
SJZ63947.1
META domain-containing protein.
  
     0.487
SKA20740.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
   0.487
SKA16629.1
SdiA-regulated.
  
     0.465
SKA17184.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
 
  0.460
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.