STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA15477.1Protein of unknown function. (254 aa)    
Predicted Functional Partners:
SJZ34233.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.770
SKA13263.1
DoxX protein.
  
     0.765
SJZ72920.1
Cell division protein FtsQ.
  
     0.759
SJZ54601.1
Uncharacterized ACR, COG1399.
  
     0.755
SJZ76644.1
Hypothetical protein.
  
     0.749
SKA02602.1
pRiA4b ORF-3-like protein.
  
     0.736
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.729
SJZ47400.1
Putative porin.
  
     0.728
SKA12490.1
Tetratricopeptide repeat-containing protein.
  
     0.725
SJZ86128.1
Protein of unknown function.
  
     0.724
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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