SKA19169.1 protein (Sediminibacterium ginsengisoli)

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Score

SKA19169.1

ATP-binding cassette, subfamily F, member 3. (646 aa)

Predicted Functional Partners:

rplR

0.872

rplO

0.868

rplD

0.863

rplU

0.859

rpsO

0.858

rplM

0.857

rpsC

0.857

rpmH

0.854

rplC

0.854

rplT

0.852

Your Current Organism:

Sediminibacterium ginsengisoli

NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKA19169.1	rplC	SAMN04488132_11471	SAMN04488132_1154	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.854
SKA19169.1	rplD	SAMN04488132_11471	SAMN04488132_1155	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.863
SKA19169.1	rplM	SAMN04488132_11471	SAMN04488132_11288	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.857
SKA19169.1	rplO	SAMN04488132_11471	SAMN04488132_11523	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.868
SKA19169.1	rplR	SAMN04488132_11471	SAMN04488132_11520	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.872
SKA19169.1	rplT	SAMN04488132_11471	SAMN04488132_11465	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.852
SKA19169.1	rplU	SAMN04488132_11471	SAMN04488132_11446	ATP-binding cassette, subfamily F, member 3.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.859
SKA19169.1	rpmH	SAMN04488132_11471	SAMN04488132_103156	ATP-binding cassette, subfamily F, member 3.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.854
SKA19169.1	rpsC	SAMN04488132_11471	SAMN04488132_11510	ATP-binding cassette, subfamily F, member 3.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.857
SKA19169.1	rpsO	SAMN04488132_11471	SAMN04488132_102491	ATP-binding cassette, subfamily F, member 3.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.858
rplC	SKA19169.1	SAMN04488132_1154	SAMN04488132_11471	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATP-binding cassette, subfamily F, member 3.	0.854
rplC	rplD	SAMN04488132_1154	SAMN04488132_1155	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN04488132_1154	SAMN04488132_11288	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplO	SAMN04488132_1154	SAMN04488132_11523	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplR	SAMN04488132_1154	SAMN04488132_11520	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplT	SAMN04488132_1154	SAMN04488132_11465	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplC	rplU	SAMN04488132_1154	SAMN04488132_11446	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rpmH	SAMN04488132_1154	SAMN04488132_103156	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.	0.988
rplC	rpsC	SAMN04488132_1154	SAMN04488132_11510	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SAMN04488132_1154	SAMN04488132_102491	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998