STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKA20708.1WD40-like Beta Propeller Repeat. (326 aa)    
Predicted Functional Partners:
SKA18590.1
WD40-like Beta Propeller Repeat.
  
   0.812
SJZ64867.1
WD40-like Beta Propeller Repeat.
  
   0.727
SJZ83636.1
Hypothetical protein.
  
 
 
 0.674
SKA12146.1
Outer membrane protein OmpA.
  
   0.632
SJZ97420.1
TonB family C-terminal domain-containing protein.
  
 
   0.621
SJZ39182.1
Signal transducer regulating beta-lactamase production, contains metallopeptidase domain.
 
   0.600
SJZ38440.1
WD40-like Beta Propeller Repeat.
  
  
0.544
SKA20698.1
Hypothetical protein.
       0.536
SKA06836.1
Outer membrane protein OmpA.
  
   0.531
SKA20716.1
ATP-binding cassette, subfamily B.
       0.531
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.