STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA-5Metal ABC transporter ATPase. (806 aa)    
Predicted Functional Partners:
copA
Metal ABC transporter ATPase.
 
 
0.967
AAW51_5502
Superoxide dismutase, Cu-Zn family; SOD1.
  
 0.962
AAW51_2856
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.961
AAW51_4033
MerR family transcriptional regulator.
 
  
 0.860
nirK
Nitrite reductase; Belongs to the multicopper oxidase family.
 
 0.739
AAW51_4026
Heavy metal transporter; ATOX1.
 
 
 0.684
copA-3
Cu+-exporting ATPase.
 
 
0.679
copB
ATPase P.
 
 
0.663
zntA
4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase.
 
 
0.656
AAW51_0448
Heavy metal transporter.
  
 
 0.628
Your Current Organism:
Polyangium brachysporum
NCBI taxonomy Id: 413882
Other names: ATCC 53080, DSM 7029, NBRC 100090, [. brachysporum, [Polyangium] brachysporum, strain K481-B101
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