STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AAW51_4976General secretion pathway protein D; Belongs to the bacterial secretin family. (791 aa)    
Predicted Functional Partners:
cpaF
Secretion system protein E.
  
 0.983
AAW51_4977
Flp pilus assembly protein RcpC/CpaB.
 
  
 0.981
tadB
Pilus assembly protein.
 
  
 0.945
tadC
Secretion system protein.
 
  
 0.916
AAW51_4982
Hypothetical protein.
 
  
 0.851
AAW51_4972
Hypothetical protein.
 
  
 0.826
AAW51_4983
Integral membrane protein.
 
     0.703
AAW51_1144
Type III secretion outermembrane pore forming protein.
  
   
 0.648
exbD
Biopolymer transporter ExbD.
  
     0.632
exbD-4
Biopolymer transporter ExbD.
  
     0.547
Your Current Organism:
Polyangium brachysporum
NCBI taxonomy Id: 413882
Other names: ATCC 53080, DSM 7029, NBRC 100090, [. brachysporum, [Polyangium] brachysporum, strain K481-B101
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.