Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
psd1Putative transposase (partial); Similar to an internal region of Clostridium acetobutylicum predicted transposase cac0657 SWALL:Q97LA5 (EMBL:AE007581) (334 aa) fasta scores: E(): 1, 47.05 38d in 34 aa; was marked partial. (120 aa)    
Predicted Functional Partners:
CBO0021
Putative ABC transporter, ATP-binding protein; Similar to Bacillus halodurans ABC transporter bh0179 SWALL:Q9KGC5 (EMBL:AP001507) (220 aa) fasta scores: E(): 1.6e-29, 42.13 38d in 216 aa, and to Streptococcus pneumoniae ABC transporter, ATP-binding protein sp0707 SWALL:Q97RT3 (EMBL:AE007379) (215 aa) fasta scores: E(): 3.2e-28, 45.14 38d in 206 aa.
       0.566
CBO0022
Putative membrane protein; Similar to Staphylococcus epidermidis membrane spanning protein se0213 SWALL:Q8CQC3 (EMBL:AE016744) (257 aa) fasta scores: E(): 0.022, 24.1 38d in 224 aa, and to Bacillus cereus bacitracin transport permease protein bcrb bc5399 SWALL:Q814M8 (EMBL:AE017015) (330 aa) fasta scores: E(): 0.17, 21.07 38d in 261 aa.
       0.562
CBO0023
Similar to Clostridium tetani putative membrane-spanning permease ctp35 SWALL:Q899X9 (EMBL:AF528097) (269 aa) fasta scores: E(): 0.0012, 24.26 id in 272 aa, and to Bacillus subtilis hypothetical protein yybm yybm or bsu40590 SWALL:YYBM_BACSU (SWALL:P37491) (251 aa) fasta scores: E(): 0.0018, 23.95 id in 263 aa.
       0.548
CBO0024
Similar to Clostridium tetani putative membrane-spanning permease ctp34 SWALL:Q899Y0 (EMBL:AF528097) (271 aa) fasta scores: E(): 5.6e-08,25.67 38d in 261 aa, and to Bacillus subtilis hypothetical protein yybm yybm or bsu40590 SWALL:YYBM_BACSU (SWALL:P37491) (251 aa) fasta scores: E(): 0.0006, 23.93 id in 259 aa.
       0.518
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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