Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0028Probable regulatory protein; Similar to Clostridium beijerinckii signal-transduction and transcriptional-control protein Stc SWALL:STC_CLOBE (SWALL:P26047) (632 aa) fasta scores: E(): 6.9e-53, 40.21 38d in 460 aa, and to Clostridium tetani transcriptional regulator ctc02531 SWALL:Q890V4 (EMBL:AE015944) (519 aa) fasta scores: E(): 9.9e-83,50.58 38d in 514 aa. (512 aa)    
Predicted Functional Partners:
rpoN
Similar to Alcaligenes eutrophus RNA polymerase sigma-54 factor RpoN or NtrA or Hno SWALL:RP54_ALCEU (SWALL:P28615) (493 aa) fasta scores: E(): 6.6e-36, 33.6 id in 494 aa, and to Clostridium tetani RNA polymerase sigma-54 factor RpoN or ctc00376 SWALL:Q898R6 (EMBL:AE015937) (461 aa) fasta scores: E(): 2.6e-87,60.47 38d in 463 aa.
 
   
 0.788
mdeA
Similar to Pseudomonas putida methionine gamma-lyase MdeA SWALL:MEGL_PSEPU (SWALL:P13254) (398 aa) fasta scores: E(): 3e-82, 53.03 38d in 396 aa, and to Clostridium tetani cys/met metabolism lyase ctc02530 SWALL:Q890V5 (EMBL:AE015944) (398 aa) fasta scores: E(): 3.2e-115, 73.61 38d in 398 aa.
       0.469
CBO1830
Putative hydrogenase; This CDS is also similar to CBO1832 (49.914 38d. in 579 aa overlap).
 
      0.417
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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