Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO0034Conserved hypothetical protein; Similar to Thermoanaerobacter tengcongensis hypothetical protein Tte0043 SWALL:Q8RDI2 (EMBL:AE012979) (90 aa) fasta scores: E(): 2e-05, 42.02 38d in 69 aa, and to Clostridium perfringens hypothetical protein Cpe0048 SWALL:Q8XPB7 (EMBL:AP003185) (92 aa) fasta scores: E(): 2.8e-05, 37.8 38d in 82 aa. (96 aa)    
Predicted Functional Partners:
bofA
Similar to Bacillus subtilis sigma-K factor processing regulatory protein BofA or bsu00230 SWALL:BOFA_BACSU (SWALL:P24282) (87 aa) fasta scores: E(): 0.0036, 32.92 38d in 82 aa, and to Clostridium acetobutylicum BofA b.subtilis ortholog, sigmak-factor processing regulatory protein cac0129 SWALL:Q97MR2 (EMBL:AE007525) (90 aa) fasta scores: E(): 2.3e-14, 54.76 id in 84 aa.
 
    0.809
recR
Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.754
CBO0348
Similar to Clostridium acetobutylicum hypothetical protein Cac0449 SWALL:Q97LV5 (EMBL:AE007559) (156 aa) fasta scores: E(): 1.5e-29, 56.66 38d in 150 aa.
  
     0.687
CBO1191
Conserved hypothetical protein.
  
     0.687
CBO0032
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.683
CBO0358
Putative exported protein; Similar to Clostridium tetani conserved protein ctc01330 SWALL:Q895E6 (EMBL:AE015940) (403 aa) fasta scores: E(): 1.5e-80, 50 38d in 398 aa.
  
     0.682
CBO2274
Putative ferredoxin; Similar to Clostridium acetobutylicum predicted flavodoxin oxidoreductase CAC1860 SWALL:Q97HZ6 (EMBL:AE007694) (328 aa) fasta scores: E(): 8.3e-70,54.87 38d in 328 aa. C-terminal region is weakly similar to Bacillus subtilis dihydroorotate dehydrogenase electron transfer subunit PyrK or PyrZ or BSU15530 SWALL:PYRK_BACSU (SWALL:P25983) (256 aa) fasta scores: E(): 1.4e-06, 24.47 id in 237 aa.
  
     0.677
CBO2816
Conserved hypothetical protein (partial); Pfam match to entry PF02677 DUF208, Uncharacterized BCR, COG1636, score 96.1, E-value 2.8e-26.
  
     0.634
CBO3123
Conserved hypothetical protein.
  
     0.621
CBO0082
Similar to Clostridium tetani conserved protein ctc00249 SWALL:Q899D4 (EMBL:AE015936) (438 aa) fasta scores: E(): 3.8e-27, 45.7 38d in 431 aa, and to Clostridium acetobutylicum hypothetical protein Cac2985 SWALL:Q97EX1 (EMBL:AE007795) (491 aa) fasta scores: E(): 5.8e-27, 40.65 38d in 487 aa.
  
     0.592
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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