STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bofASimilar to Bacillus subtilis sigma-K factor processing regulatory protein BofA or bsu00230 SWALL:BOFA_BACSU (SWALL:P24282) (87 aa) fasta scores: E(): 0.0036, 32.92 38d in 82 aa, and to Clostridium acetobutylicum BofA b.subtilis ortholog, sigmak-factor processing regulatory protein cac0129 SWALL:Q97MR2 (EMBL:AE007525) (90 aa) fasta scores: E(): 2.3e-14, 54.76 id in 84 aa. (86 aa)    
Predicted Functional Partners:
CBO0034
Conserved hypothetical protein; Similar to Thermoanaerobacter tengcongensis hypothetical protein Tte0043 SWALL:Q8RDI2 (EMBL:AE012979) (90 aa) fasta scores: E(): 2e-05, 42.02 38d in 69 aa, and to Clostridium perfringens hypothetical protein Cpe0048 SWALL:Q8XPB7 (EMBL:AP003185) (92 aa) fasta scores: E(): 2.8e-05, 37.8 38d in 82 aa.
 
    0.858
spoIVFB
Putative stage IV sporulation protein FB (peptidase).
  
  
 0.826
spoIIGA
Putative sporulation sigma-E factor processing peptidase.
  
   
 0.743
yqfC
Conserved hypothetical protein.
  
   
 0.701
mreD
Rod shape determining protein.
  
   
 0.678
recR
Recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
       0.676
spoIIM
Putative stage II sporulation protein.
  
   
 0.675
CBO3568
Putative lipoprotein.
  
     0.667
yabQ
Putative membrane protein.
  
   
 0.657
CBO0032
Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.648
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.