Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO0041Putative membrane protein; Similar to Clostridium perfringens hypothetical protein Cpe0058 SWALL:Q8XPA7 (EMBL:AP003185) (388 aa) fasta scores: E(): 1.7e-59, 40.9 38d in 374 aa, and to Caulobacter crescentus transporter, putative cc1133 SWALL:Q9A961 (EMBL:AE005791) (411 aa) fasta scores: E(): 4.9e-14, 23.01 38d in 352 aa. (377 aa)    
Predicted Functional Partners:
CBO0042
Similar to Clostridium acetobutylicum ribosomal-protein-alanine acetyltransferase cac0152 SWALL:Q97MP0 (EMBL:AE007527) (312 aa) fasta scores: E(): 4.1e-60, 49.2 38d in 315 aa, and to Clostridium perfringens probable ribosomal-protein cpe0059 SWALL:Q8XPA6 (EMBL:AP003185) (312 aa) fasta scores: E(): 1.9e-53, 45.77 38d in 308 aa, and to Escherichia coli,Escherichia coli O157:H7, and Shigella flexneri ribosomal-protein-alanine acetyltransferase RimJ or b1066 or z1703 or ecs1444 or sf1072 or s1150 SWALL:RIMJ_ECOLI (SWALL:P09454) (194 aa) fasta scores: E(): 3.4e-14, 39.39 id in 165 aa.
       0.756
CBO0040
Conserved hypothetical protein; Similar to Clostridium tetani dinucleotide-utilizing enzyme ctc00868 SWALL:Q896X5 (EMBL:AE015939) (246 aa) fasta scores: E(): 1.3e-49,58.75 38d in 240 aa, and to Clostridium acetobutylicum dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1 cac0908 SWALL:Q97KK9 (EMBL:AE007606) (251 aa) fasta scores: E(): 6.3e-46,58.87 38d in 248 aa.
       0.689
cbiQ
Putative cobalt transport protein.
  
     0.512
CBO0191
Putative adenylate cyclase; Similar to Clostridium acetobutylicum adenilate cyclase, class2 cac0650 SWALL:Q97LB2 (EMBL:AE007580) (180 aa) fasta scores: E(): 8.5e-37, 64.77 38d in 176 aa, and to Clostridium perfringens hypothetical protein Cpe1352 cpe1352 SWALL:Q8XKP2 (EMBL:AP003190) (187 aa) fasta scores: E(): 6.5e-36, 62.92 38d in 178 aa.
  
     0.504
CBO0404
Putative transcriptional regulator; Similar to Bacillus stearothermophilus transcriptional activator NprA SWALL:NPRA_BACST (SWALL:P43130) (406 aa) fasta scores: E(): 5.8e-06, 19.61 id in 413 aa, and to Bacillus subtilis response regulator aspartate phosphatase A RapA or GsiaA or spo0l or bsu12430 SWALL:RAPA_BACSU (SWALL:Q00828) (378 aa) fasta scores: E(): 0.0019, 21.46 38d in 368 aa.
  
     0.502
lepB-2
Putative signal peptidase I; Belongs to the peptidase S26 family.
   
    0.496
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
     
 0.475
divIC
Cell division protein.
  
     0.473
CBO1805
Putative acetyltransferase.
  
    0.440
CBO1991
PTS system, IIbc component.
      
 0.434
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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